Below are the OTU analysis results of microbiome datasets from the studies conducted in ASEAN countries, grouped by habitat types. The metagenomic raw sequence data were downloaded from NCBI Bioproject and OTU-binned using Kaiju (with NCBI nr, KRAKEN 16S rRNA, and UNITE fungal ITS sequence databases). The latest version of datasets were updated on 20 February 2020.
The downloadable files are formatted in the [biom file format version 1.0]with dense OTU matrix type. Each file contains sample metadata, OTU taxonomy, and species-level OTU read counts.
If you use our results in your published work, please cite;
AnMicro. “AmiBase - ASEAN Microbial Database”. Retrieved 11 October 2024 (https://www.amibase.org/microbiome_download.php).
Group | Number of Species OTU |
---|---|
Freshwater
|
7,217 |
Soil
|
11,893 |
Wastewater & sludge
|
33,141 |
ASEAN microbiome datasets (including bacteria, fungi, archaea, protozoa, algae, and viruses)
Habitat | |
---|---|
Group | Number of Species OTU |
Air
|
10,731 |
Freshwater
|
28,604 |
Hot spring
|
4,089 |
Marine
|
20,932 |
Saline spring
|
409 |
Soil
|
36,271 |
Wastewater & sludge
|
52,016 |
Water sediment
|
34,112 |
Biofilm
|
9,334 |
Host-associated | |
---|---|
Group | Number of Species OTU |
Human
|
30,100 |
Invertebrate
|
41,512 |
Algae
|
147 |
Plant
|
35,489 |
Plant-invertebrate
|
258 |
Vertebrate
|
5,454 |
Miscellaneous | |
---|---|
Group | Number of Species OTU |
Bioreactor
|
22,497 |
Food
|
2,789 |
Microplastics
|
261 |
Uncategorized
|
19,666 |
Group | Number of ASV |
---|---|
Mekong River (Bacteria)
|
81,679 |
Mekong River (Fungi)
|
21,211 |